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文章发表:两种方法在进化树上可视化数据

Y叔叔 YuLabSMU 2022-09-20

Ggtree is a comprehensive R package for visualizing and annotating phylogenetic trees with associated data. It can also map and visualize associated external data on phylogenies with two general methods. Method 1 allows external data to be mapped on the tree structure and used as visual characteristic in tree and data visualization. Method 2 plots the data with the tree side by side using different geometric functions after reordering the data based on the tree structure. These two methods integrate data with phylogeny for further exploration and comparison in the evolutionary biology context. Ggtree is available from http://www.bioconductor.org/packages/ggtree.

这篇文章讲的内容,在多次的推文中都有涉及,算是比较零散,但细节就在这些零散的推文之中。

而提炼出来无非是两种方法,是我在为【科学嘎嘎会】的网络讲座准备slides的时候,总结出来无非是个【双城记】,录播和slides都有在公众号里提供:

催生我去投这篇文章,是因为看到了MEGA X的发表,我感觉到自己也能发一篇类似的,而且MEGA发表会带来巨大的流量,促使MBE影响因子上升,我也可以噌一下,算是如愿以偿,发了篇10分的文章。

看到最后的才是真爱,点击阅读原文可以直达文章,而且是作者专享的全文链接。

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